GWAS with PLINK
- Navigate to the GWAS with PLINK launcher card. You can also find this workflow using the search bar in the top right corner, or by using the “Association Studies” filter on the left-hand side.
- Select version 0.0.1 from the dropdown menu in the top right corner, and click “Run Workflow” when ready
- Launcher Tabs
- Select a MAP file for variant information, and a PED file for pedigree information and genotype calling
b. Tune workflow parameters, including the minor allele frequency (MAF) and Hardy-Weinberg Equilibrium statistic (HWE).
c. Name the workflow run and review workflow inputs and parameters. When ready to submit, click “Run Workflow” in the bottom left corner