Precision Medicine

• Expression Analysis in RNASeq
• Use Cases
• Summary and Methods
• Inputs
• Outputs
• Workflow Walkthrough
• Results Walkthrough
• Citations
• Built with
• Genomic Variant Analysis
• Use Cases
• Summary and Methods
• Inputs
• Outputs
• Workflow Walkthrough
• Results Walkthrough
• Citations
• Built with
• Human Haplotype
• Summary
• Workflow Walkthrough
• Citations
• Built with

Expression Analysis in RNASeq

This workflow can be used to determine gene expression, splice variants and differential expression analysis.

Version 1.1.1

Use Cases

• Determine differentially expressed genes between two or more groups of samples (treated vs untreated, knock-out vs wildtype, cell type A vs cell type B)
• Determine differentially expressed transcripts between two or more groups of samples
• Compare the gene expression profiles of samples

Summary and Methods

Built with

Genomic Variant Analysis

Identify single-nucleotide variants (SNVs), indels, and structural variants in a diploid genome resequencing projects by comparison to a reference genome.

Version 1.6.1

Use Cases

• Determine variants in DNA samples compared to a reference genome including single nucleotide variants (SNVs), insertions, deletions and structural variants
• Germline Variant Calling
• Variant Calling in Ancient DNA
• Somatic Mutation Detection
• Determine variants in DNA samples compared to a custom reference genome for small or synthetic genomes
• Plasmid
• Virus
• Bacteria
• Synthetic Genome
• Sequencing Platform supported include Illumina, Pacbio and Oxford Nanopore (ONT)

Summary and Methods

Built with

Human Haplotype

Determine the haplotype of certain human genes, include HLA, RBG, and Codis.

Version 0.0.2

Summary

Sequence reads are aligned and their haplotype is predicted using Hisat-Genotype [1].

Built with