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External Data

Download Public Data Files

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Download publicly available Short-Read Archive (SRA), Gene Expression Omnibus (GEO), or Recount3 data from their respective databases, files from URL, or gene sequences.

Version 1.0.1

Use Cases

Access and download data from a variety of sources

  • Short Read Archive (SRA) data from the NCBI and EMBL
  • Gene Expression Omnibus (GEO) data from the NCBI
  • Recount3 Data: a public RNASeq project of human and mouse samples

Summary and Methods

This workflow is designed to help the user download data from a variety of sources, including Short Read Archive (SRA) data, gene sequences from supported genomes, the Gene Expression Omnibus (GEO), and Recount3. Click the toggles below to learn more about how the workflow accesses data from each source.

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Short Read Archive (SRA) Data

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Gene Expression Omnibus (GEO)

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Recount3: Gene Expression Data in Mouse/Human

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Inputs

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Outputs

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Workflow Walkthrough

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Results Walkthrough

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